Welcome to UAMMD-structured's documentation!
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.. toctree::
   :maxdepth: 2
   :caption: About UAMMD-structured

   What is UAMMD-structured and what is not?
   UAMMD-structured compilation and installation
   First Example

.. toctree::
   :maxdepth: 2
   :caption: UAMMD-structured Guide

   Simulation
   Execution
   Input
   System
   Global
   State
   Integrators
   Topology
   Simulation Steps

.. toctree::
   :maxdepth: 2
   :caption: Global Data

   GlobalData/Fundamental/index
   GlobalData/Units/index
   GlobalData/Types/index
   GlobalData/Ensemble/index

.. toctree::
   :maxdepth: 2
   :caption: Integrators

   Integrator/Minimization/index
   Integrator/NVE/index
   Integrator/NVT/index
   Integrator/Special/index

.. toctree::
   :maxdepth: 2
   :caption: Interactors

   Interactor/Bonds/index
   Interactor/Single/index
   Interactor/NonBonded/index
   Interactor/Set/index
   Interactor/AFM/index

.. toctree::
   :maxdepth: 1
   :caption: Data Structures

   DataStructures/VerletConditionalListSet/index

.. toctree::
   :maxdepth: 2
   :caption: Simulation Steps

   SimulationStep/SimulationUtils/index
   SimulationStep/SimulationOutput/index
   SimulationStep/SimulationMeasures/index

.. toctree::
   :maxdepth: 2
   :caption: Utilities

   Utilities/Groups
   Utilities/Scheduling the components
   Utilities/Batching

.. toctree::
   :maxdepth: 2
   :caption: pyUAMMD

   pyUAMMD/Introduction
   pyUAMMD/Installation

.. toctree::
   :maxdepth: 2
   :caption: Implementation

   Implementation/Input/index.rst
   Implementation/Design/index.rst
   Implementation/Extending/index.rst
   Implementation/Developers.rst

.. toctree::
   :maxdepth: 2
   :caption: Online Examples

   Online Examples